PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P00580_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family LBD
Protein Properties Length: 234aa    MW: 24640.1 Da    PI: 8.2108
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P00580_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26099.33.8e-314106198
                 DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilkl 83 
                            +C++C+vlr++C+++C+++p++     p++q++++ +++k++G++ + +l++a pe+ r+++++sl+yeA+ r+ +P+yG+vg+++++
  GSMUA_Achr9P00580_001   4 SCNGCRVLRKGCSDGCTIRPCLqwiksPEAQANATVFLAKFYGRAGLANLIDAGPEHLRPAIFQSLLYEACGRIVNPIYGSVGLLWSG 91 
                            6*************************************************************************************** PP

                 DUF260  84 qqqleqlkaelallk 98 
                            ++ql+q+++e++l +
  GSMUA_Achr9P00580_001  92 SWQLCQAAVEAVLKG 106
                            *********998876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.6913109IPR004883Lateral organ boundaries, LOB
PfamPF031955.4E-254103IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSDGCT IRPCLQWIKS PEAQANATVF LAKFYGRAGL ANLIDAGPEH  60
LRPAIFQSLL YEACGRIVNP IYGSVGLLWS GSWQLCQAAV EAVLKGAPVT QISSDSAAAA  120
VPAFKAYDIR HVAKKSDAAA VPGGLHSVAA RSRTRRENGS AFSGETAERS HVSQGEPDAE  180
PADVGLDLRL GLEPESRNGG GVAGGEPVVV PQMERRKAWA ADACRVELGL SLVA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9547648e-43EU954764.1 Zea mays clone 1482325 hypothetical protein mRNA, complete cds.
GenBankKJ7284048e-43KJ728404.1 Zea mays clone pUT6709 LOB transcription factor (LOB15) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009415791.11e-155PREDICTED: LOB domain-containing protein 40-like
SwissprotQ9M8862e-80LBD41_ARATH; LOB domain-containing protein 41
TrEMBLM0TWB51e-170M0TWB5_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P00580_0011e-170(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123537127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.12e-81LOB domain-containing protein 41